Detailed information of SNP:
|
SNP ID:
sf0609097356(Gbrowse)
Chromosome: chr06 Position: 9097356 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.37% | 32.63% |
| All Indica | 799 | 72.97% | 27.03% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609097356 | T->C | LOC_Os06g15995(LOC_Os06g15995.1) | UTR_5_PRIME |