Detailed information of SNP:
|
SNP ID:
sf0609098268(Gbrowse)
Chromosome: chr06 Position: 9098268 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.56% | 32.44% |
| All Indica | 799 | 73.22% | 26.78% |
| All Japonica | 497 | 51.91% | 48.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609098268 | G->C | INTERGENIC | None |