Detailed information of SNP:
|
SNP ID:
sf0609099241(Gbrowse)
Chromosome: chr06 Position: 9099241 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.63% | 32.37% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 61.23% | 38.77% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609099241 | G->T | INTERGENIC | None |