Detailed information of SNP:
|
SNP ID:
sf0609105094(Gbrowse)
Chromosome: chr06 Position: 9105094 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 96.72% | 3.28% |
| All Indica | 726 | 95.32% | 4.68% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 37 | 83.78% | 16.22% |
| Indica I | 349 | 97.71% | 2.29% |
| Indica II | 188 | 89.89% | 10.11% |
| Indica Intermediate | 189 | 96.30% | 3.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609105094 | C->T | INTERGENIC | None |