Detailed information of SNP:
|
SNP ID:
sf0609105484(Gbrowse)
Chromosome: chr06 Position: 9105484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 87.22% | 12.78% |
| All Indica | 768 | 79.17% | 20.83% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 361 | 80.89% | 19.11% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 200 | 77.50% | 22.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609105484 | C->T | INTERGENIC | None |