Detailed information of SNP:
|
SNP ID:
sf0609116648(Gbrowse)
Chromosome: chr06 Position: 9116648 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.23% | 36.77% |
| All Indica | 797 | 73.90% | 26.10% |
| All Japonica | 497 | 51.51% | 48.49% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 30.45% | 69.55% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609116648 | G->A | LOC_Os06g16030(LOC_Os06g16030.1) | INTRON |