Detailed information of SNP:
|
SNP ID:
sf0609170484(Gbrowse)
Chromosome: chr06 Position: 9170484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 91.00% | 9.00% |
| All Indica | 751 | 84.82% | 15.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 348 | 89.08% | 10.92% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 197 | 79.70% | 20.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609170484 | C->T | LOC_Os06g16100(LOC_Os06g16100.1) | Synonymous |