Detailed information of SNP:
|
SNP ID:
sf0609172073(Gbrowse)
Chromosome: chr06 Position: 9172073 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 85.51% | 14.49% |
| All Indica | 735 | 85.58% | 14.42% |
| All Japonica | 484 | 91.94% | 8.06% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 353 | 89.80% | 10.20% |
| Indica II | 192 | 81.25% | 18.75% |
| Indica Intermediate | 190 | 82.11% | 17.89% |
| Temperate Japonica | 329 | 97.87% | 2.13% |
| Tropical Japonica | 88 | 75.00% | 25.00% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609172073 | G->A | LOC_Os06g16100(LOC_Os06g16100.1) | Non-Synonymous SNP |