Detailed information of SNP:
|
SNP ID:
sf0609172264(Gbrowse)
Chromosome: chr06 Position: 9172264 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 97.59% | 2.41% |
| All Indica | 791 | 96.71% | 3.29% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609172264 | A->G | INTERGENIC | None |