Detailed information of SNP:
|
SNP ID:
sf0609180740(Gbrowse)
Chromosome: chr06 Position: 9180740 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 94.80% | 5.20% |
| All Indica | 791 | 91.53% | 8.47% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609180740 | C->T | LOC_Os06g16130(LOC_Os06g16130.1) | Non-Synonymous SNP |