Detailed information of SNP:
|
SNP ID:
sf0609204987(Gbrowse)
Chromosome: chr06 Position: 9204987 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 75.71% | 24.29% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 495 | 49.90% | 50.10% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609204987 | G->A | LOC_Os06g16160(LOC_Os06g16160.1) | Non-Synonymous SNP |