Detailed information of SNP:
|
SNP ID:
sf0609224639(Gbrowse)
Chromosome: chr06 Position: 9224639 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 90.84% | 9.16% |
| All Indica | 797 | 94.35% | 5.65% |
| All Japonica | 490 | 84.69% | 15.31% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 88 | 37.50% | 62.50% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609224639 | C->T | INTERGENIC | None |