Detailed information of SNP:
|
SNP ID:
sf0609312419(Gbrowse)
Chromosome: chr06 Position: 9312419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 88.99% | 11.01% |
| All Indica | 795 | 93.21% | 6.79% |
| All Japonica | 481 | 81.50% | 18.50% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 210 | 80.95% | 19.05% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 86 | 22.09% | 77.91% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609312419 | C->T | INTERGENIC | None |