Detailed information of SNP:
|
SNP ID:
sf0609349916(Gbrowse)
Chromosome: chr06 Position: 9349916 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 97.84% | 2.16% |
| All Indica | 777 | 99.74% | 0.26% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 354 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609349916 | A->G | INTERGENIC | None |