Detailed information of SNP:
|
SNP ID:
sf0609393619(Gbrowse)
Chromosome: chr06 Position: 9393619 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.52% | 40.48% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 496 | 29.84% | 70.16% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 42.22% | 57.78% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609393619 | C->G | INTERGENIC | None |