Detailed information of SNP:
|
SNP ID:
sf0609393625(Gbrowse)
Chromosome: chr06 Position: 9393625 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.60% | 49.40% |
| All Indica | 799 | 15.77% | 84.23% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 17.87% | 82.13% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 211 | 4.74% | 95.26% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609393625 | C->T | INTERGENIC | None |