Detailed information of SNP:
|
SNP ID:
sf0609444028(Gbrowse)
Chromosome: chr06 Position: 9444028 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 82.06% | 17.94% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 493 | 61.05% | 38.95% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 332 | 48.49% | 51.51% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609444028 | G->A | INTERGENIC | None |