Detailed information of SNP:
|
SNP ID:
sf0609449366(Gbrowse)
Chromosome: chr06 Position: 9449366 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 92.53% | 7.47% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 433 | 81.99% | 18.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 89.05% | 10.95% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609449366 | C->T | INTERGENIC | None |