Detailed information of SNP:
|
SNP ID:
sf0609450876(Gbrowse)
Chromosome: chr06 Position: 9450876 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 84.13% | 15.87% |
| All Indica | 789 | 97.72% | 2.28% |
| All Japonica | 494 | 60.32% | 39.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 333 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609450876 | T->A | INTERGENIC | None |