Detailed information of SNP:
|
SNP ID:
sf0609451460(Gbrowse)
Chromosome: chr06 Position: 9451460 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 82.67% | 17.33% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 494 | 59.51% | 40.49% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 50.30% | 49.70% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609451460 | G->A | INTERGENIC | None |