Detailed information of SNP:
|
SNP ID:
sf0609455505(Gbrowse)
Chromosome: chr06 Position: 9455505 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 94.75% | 5.25% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 85.66% | 14.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 88.92% | 11.08% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609455505 | G->T | INTERGENIC | None |