Detailed information of SNP:
|
SNP ID:
sf0609456230(Gbrowse)
Chromosome: chr06 Position: 9456230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 80.25% | 19.75% |
| All Indica | 787 | 86.66% | 13.34% |
| All Japonica | 439 | 78.13% | 21.87% |
| Aus | 62 | 29.03% | 70.97% |
| Indica I | 369 | 85.64% | 14.36% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 309 | 86.73% | 13.27% |
| Tropical Japonica | 74 | 51.35% | 48.65% |
| Japonica Intermediate | 56 | 66.07% | 33.93% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609456230 | G->A | INTERGENIC | None |