Detailed information of SNP:
|
SNP ID:
sf0609472232(Gbrowse)
Chromosome: chr06 Position: 9472232 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1283 | 77.71% | 22.29% |
| All Indica | 767 | 95.83% | 4.17% |
| All Japonica | 409 | 49.63% | 50.37% |
| Aus | 55 | 40.00% | 60.00% |
| Indica I | 355 | 93.52% | 6.48% |
| Indica II | 204 | 96.08% | 3.92% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 279 | 58.78% | 41.22% |
| Tropical Japonica | 81 | 33.33% | 66.67% |
| Japonica Intermediate | 49 | 24.49% | 75.51% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609472232 | G->A | LOC_Os06g16510(LOC_Os06g16510.1) | SNPs that introduce stop codons |