Detailed information of SNP:
|
SNP ID:
sf0609546478(Gbrowse)
Chromosome: chr06 Position: 9546478 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 98.21% | 1.79% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 479 | 95.62% | 4.38% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 321 | 95.64% | 4.36% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609546478 | A->C | INTERGENIC | None |