Detailed information of SNP:
|
SNP ID:
sf0609584937(Gbrowse)
Chromosome: chr06 Position: 9584937 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.86% | 41.14% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 496 | 28.23% | 71.77% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 39.10% | 60.90% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609584937 | A->C | INTERGENIC | None |