Detailed information of SNP:
|
SNP ID:
sf0609608549(Gbrowse)
Chromosome: chr06 Position: 9608549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.34% | 48.66% |
| All Indica | 799 | 16.52% | 83.48% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 23.00% | 77.00% |
| Indica Intermediate | 211 | 5.69% | 94.31% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609608549 | C->T | LOC_Os06g16680(LOC_Os06g16680.1) | Non-Synonymous SNP |