Detailed information of SNP:



SNP ID: sf0609610197(Gbrowse)

Chromosome: chr06

Position: 9610197
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1417 98.73% 1.27%
All Indica799 100.00% 0.00%
All Japonica495 96.36% 3.64%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 95.21% 4.79%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0609610197 A->G LOC_Os06g16680(LOC_Os06g16680.1) INTRON