Detailed information of SNP:
|
SNP ID:
sf0609642430(Gbrowse)
Chromosome: chr06 Position: 9642430 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 82.91% | 17.09% |
| All Indica | 793 | 89.28% | 10.72% |
| All Japonica | 494 | 71.46% | 28.54% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 371 | 93.53% | 6.47% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 332 | 60.84% | 39.16% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609642430 | G->A | INTERGENIC | None |