Detailed information of SNP:
|
SNP ID:
sf0609648172(Gbrowse)
Chromosome: chr06 Position: 9648172 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.92% | 15.08% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609648172 | C->T | INTERGENIC | None |