Detailed information of SNP:
|
SNP ID:
sf0609653678(Gbrowse)
Chromosome: chr06 Position: 9653678 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609653678 | G->A | INTERGENIC | None |