Detailed information of SNP:
|
SNP ID:
sf0609675504(Gbrowse)
Chromosome: chr06 Position: 9675504 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 85.64% | 14.36% |
| All Indica | 796 | 81.28% | 18.72% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609675504 | A->G | INTERGENIC | None |