Detailed information of SNP:
|
SNP ID:
sf0609676936(Gbrowse)
Chromosome: chr06 Position: 9676936 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 84.65% | 15.35% |
| All Indica | 797 | 81.43% | 18.57% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609676936 | T->C | INTERGENIC | None |