Detailed information of SNP:
|
SNP ID:
sf0609677116(Gbrowse)
Chromosome: chr06 Position: 9677116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 63.84% | 36.16% |
| All Indica | 797 | 88.96% | 11.04% |
| All Japonica | 497 | 31.79% | 68.21% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 33.13% | 66.87% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609677116 | G->A | INTERGENIC | None |