Detailed information of SNP:
|
SNP ID:
sf0609683473(Gbrowse)
Chromosome: chr06 Position: 9683473 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 496 | 78.43% | 21.57% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 334 | 69.16% | 30.84% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609683473 | T->A | INTERGENIC | None |