Detailed information of SNP:
|
SNP ID:
sf0609695058(Gbrowse)
Chromosome: chr06 Position: 9695058 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 85.42% | 14.58% |
| All Indica | 795 | 80.88% | 19.12% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609695058 | G->A | INTERGENIC | None |