Detailed information of SNP:
|
SNP ID:
sf0609696277(Gbrowse)
Chromosome: chr06 Position: 9696277 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 86.07% | 13.93% |
| All Indica | 781 | 75.80% | 24.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 85.60% | 14.40% |
| Indica II | 204 | 49.02% | 50.98% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609696277 | C->G | INTERGENIC | None |