Detailed information of SNP:
|
SNP ID:
sf0609744095(Gbrowse)
Chromosome: chr06 Position: 9744095 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 98.14% | 1.86% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 482 | 96.89% | 3.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 83 | 93.98% | 6.02% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 10 | 60.00% | 40.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609744095 | A->C | LOC_Os06g16830(LOC_Os06g16830.1) | Non-Synonymous SNP |