Detailed information of SNP:
|
SNP ID:
sf0609746067(Gbrowse)
Chromosome: chr06 Position: 9746067 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 95.77% | 4.23% |
| All Indica | 764 | 95.42% | 4.58% |
| All Japonica | 486 | 95.47% | 4.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 97.45% | 2.55% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609746067 | C->T | INTERGENIC | None |