Detailed information of SNP:
|
SNP ID:
sf0609792223(Gbrowse)
Chromosome: chr06 Position: 9792223 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 94.65% | 5.35% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 486 | 85.80% | 14.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 92.10% | 7.90% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609792223 | A->G | LOC_Os06g16890(LOC_Os06g16890.1) | Non-Synonymous SNP |