Detailed information of SNP:
|
SNP ID:
sf0609806425(Gbrowse)
Chromosome: chr06 Position: 9806425 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.92% | 47.08% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609806425 | T->C | LOC_Os06g16919(LOC_Os06g16919.2) | INTRON |
| sf0609806425 | T->C | LOC_Os06g16919(LOC_Os06g16919.1) | INTRON |
| sf0609806425 | T->C | LOC_Os06g16919(LOC_Os06g16919.3) | INTRON |
| sf0609806425 | T->C | LOC_Os06g16919(LOC_Os06g16919.4) | INTRON |