Detailed information of SNP:
|
SNP ID:
sf0609806880(Gbrowse)
Chromosome: chr06 Position: 9806880 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.84% | 14.16% |
| All Indica | 799 | 81.85% | 18.15% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609806880 | T->A | LOC_Os06g16919(LOC_Os06g16919.2) | UTR_3_PRIME |
| sf0609806880 | T->A | LOC_Os06g16919(LOC_Os06g16919.1) | INTRON |
| sf0609806880 | T->A | LOC_Os06g16919(LOC_Os06g16919.3) | UTR_3_PRIME |
| sf0609806880 | T->A | LOC_Os06g16919(LOC_Os06g16919.4) | INTRON |