Detailed information of SNP:
|
SNP ID:
sf0609808023(Gbrowse)
Chromosome: chr06 Position: 9808023 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.76% | 3.24% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609808023 | C->T | LOC_Os06g16919(LOC_Os06g16919.2) | UTR_5_PRIME |
| sf0609808023 | C->T | LOC_Os06g16919(LOC_Os06g16919.1) | UTR_5_PRIME |
| sf0609808023 | C->T | LOC_Os06g16919(LOC_Os06g16919.3) | UTR_5_PRIME |
| sf0609808023 | C->T | LOC_Os06g16919(LOC_Os06g16919.4) | UTR_5_PRIME |