Detailed information of SNP:
|
SNP ID:
sf0609808562(Gbrowse)
Chromosome: chr06 Position: 9808562 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 88.63% | 11.37% |
| All Indica | 788 | 85.15% | 14.85% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 84.82% | 15.18% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609808562 | C->T | INTERGENIC | None |