Detailed information of SNP:
|
SNP ID:
sf0609821558(Gbrowse)
Chromosome: chr06 Position: 9821558 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 75.78% | 24.22% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 493 | 58.22% | 41.78% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 332 | 64.16% | 35.84% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609821558 | G->A | LOC_Os06g16950(LOC_Os06g16950.1) | SNPs that introduce stop codons |