Detailed information of SNP:
|
SNP ID:
sf0609829370(Gbrowse)
Chromosome: chr06 Position: 9829370 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.10% | 31.90% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609829370 | C->G | INTERGENIC | None |