Detailed information of SNP:
|
SNP ID:
sf0609836970(Gbrowse)
Chromosome: chr06 Position: 9836970 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 86.42% | 13.58% |
| All Indica | 792 | 94.32% | 5.68% |
| All Japonica | 459 | 70.37% | 29.63% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 207 | 95.17% | 4.83% |
| Temperate Japonica | 303 | 57.10% | 42.90% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609836970 | T->G | LOC_Os06g16970(LOC_Os06g16970.1) | INTRON |