Detailed information of SNP:
|
SNP ID:
sf0609840755(Gbrowse)
Chromosome: chr06 Position: 9840755 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 98.94% | 1.06% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 95.80% | 4.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609840755 | A->T | LOC_Os06g16980(LOC_Os06g16980.2) | INTRON |
| sf0609840755 | A->T | LOC_Os06g16980(LOC_Os06g16980.1) | INTRON |