Detailed information of SNP:
|
SNP ID:
sf0609856446(Gbrowse)
Chromosome: chr06 Position: 9856446 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.50% | 26.50% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609856446 | A->G | INTERGENIC | None |