Detailed information of SNP:
|
SNP ID:
sf0609857988(Gbrowse)
Chromosome: chr06 Position: 9857988 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.50% | 26.50% |
| All Indica | 799 | 76.60% | 23.40% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609857988 | T->C | INTERGENIC | None |