Detailed information of SNP:
|
SNP ID:
sf0609860469(Gbrowse)
Chromosome: chr06 Position: 9860469 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.25% | 26.75% |
| All Indica | 798 | 76.32% | 23.68% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609860469 | A->T | INTERGENIC | None |